Hepatitis Sequence Matcher (HSM) searches the HepSeq database for sequences
matching the user input sequence, and returns exact
matches if there are any.
The option of returning similar (equal or above 98% identical)
matches is also implemented using NCBI stand-alone 'BLAST' tool or
EMBOSS tools 'Water' (Smith-Waterman) or 'Needle' (Needleman-Wunsch).
The input sequence could be pasted in the box below or
could be uploaded as a file.
Only standard nucleotides without any gaps are
allowed in the sequence.
The input file should only have one sequence
without gaps or line breaks.
Matching method
Exact
Similar
Input method
Paste sequence
Upload file
Select sequence file
Hepatitis Sequence Matcher (HSM) searches the HepSeq database for sequences
matching the user input sequence, and returns exact
matches if there are any.
The option of returning similar (equal or above 98% identical)
matches is also implemented using NCBI stand-alone 'BLAST' tool or
EMBOSS tools 'Water' (Smith-Waterman) or 'Needle' (Needleman-Wunsch).
The input sequence could be pasted in the box below or
could be uploaded as a file.
Only standard nucleotides without any gaps are
allowed in the sequence.
The input file should only have one sequence
without gaps or line breaks.
Matching method
Exact
Similar
Matching tool
BLAST
Water
Needle
Blast options
-p Program name
-e Expectation value
-m Alignment view options
-G Cost to open a gap
-E Cost to extend a gap
-q Penalty for nucleotide mismatch
-r Reward for nucleotide mismatch
Input method
Paste sequence
Upload file
Select sequence file
Hepatitis Sequence Matcher (HSM) searches the HepSeq database for sequences
matching the user input sequence, and returns exact
matches if there are any.
The option of returning similar (equal or above 98% identical)
matches is also implemented using NCBI stand-alone 'BLAST' tool or
EMBOSS tools 'Water' (Smith-Waterman) or 'Needle' (Needleman-Wunsch).
The input sequence could be pasted in the box below or
could be uploaded as a file.
Only standard nucleotides without any gaps are
allowed in the sequence.
The input file should only have one sequence
without gaps or line breaks.
Matching method
Exact
Similar
Matching tool
BLAST
Water
Needle
Water options
Gap opening penalty
Gap extension penalty
Input method
Paste sequence
Upload file
Select sequence file
Hepatitis Sequence Matcher (HSM) searches the HepSeq database for sequences
matching the user input sequence, and returns exact
matches if there are any.
The option of returning similar (equal or above 98% identical)
matches is also implemented using NCBI stand-alone 'BLAST' tool or
EMBOSS tools 'Water' (Smith-Waterman) or 'Needle' (Needleman-Wunsch).
The input sequence could be pasted in the box below or
could be uploaded as a file.
Only standard nucleotides without any gaps are
allowed in the sequence.
The input file should only have one sequence
without gaps or line breaks.
